SPECIES OF GENE SETS:

Caenorhabditis elegans (Nematoda) Danio rerio (Zebrafish) Drosophila melanogaster (Fruitfly) Homo sapiens (Human) Mus musculus (Mouse) Saccharomyces cerevisiae (Yeast) Acyrthosiphon pisum (pea aphid) Aedes aegypti (yellow fever mosquito) Ailuropoda melanoleuca (giant panda) Amphimedon queenslandica Anas platyrhynchos (mallard ducks) Anolis carolinensis (green anole) Anopheles darlingi (American malaria mosquito) Anopheles gambiae (African malaria mosquito) Apis mellifera (honeybee) Ashbya gossypii Aspergillus clavatus Aspergillus flavus Aspergillus fumigatus Aspergillus nidulans Aspergillus niger Aspergillus oryzae Aspergillus terreus Astyanax mexicanus (blind cave fish) Atta cephalotes Belgica antarctica Blumeria graminis (grass mildew) Bombus impatiens (common eastern bumble bee) Bombyx mori (silkworm) Bos taurus (domestic cow) Botrytis cinerea Brugia malayi (agent of lymphatic filariasis) Caenorhabditis brenneri Caenorhabditis briggsae Caenorhabditis elegans (roundworm) Caenorhabditis japonica Caenorhabditis remanei Callithrix jacchus (white-tufted-ear marmoset) Canis familiaris (Dog) Capitella teleta Cavia porcellus (guinea pig) Chlorocebus sabaeus (green monkey) Choloepus hoffmanni (Hoffmann's two-toed sloth) Ciona intestinalis (yellow sea squirt) Ciona savignyi (transparent tunicate) Colletotrichum gloeosporioides Colletotrichum graminicola Colletotrichum higginsianum Colletotrichum orbiculare Crassostrea gigas (Pacific oyster) Cryptococcus neoformans Culex quinquefasciatus (southern house mosquito) Danaus plexippus (monarch butterfly) Danio rerio (zebrafish) Daphnia pulex (common water flea) Dasypus novemcinctus (nine-banded armadillo) Dendroctonus ponderosae (mountain pine beetle) Dipodomys ordii (Ord's kangaroo rat) Dothistroma septosporum Drosophila ananassae Drosophila erecta Drosophila grimshawi Drosophila melanogaster (fruit fly) Drosophila mojavensis Drosophila persimilis Drosophila pseudoobscura Drosophila sechellia Drosophila simulans Drosophila virilis Drosophila willistoni Drosophila yakuba Echinops telfairi (small Madagascar hedgehog) Equus caballus (horse) Erinaceus europaeus (western European hedgehog) Felis catus (domestic cat) Ficedula albicollis (collared flycatcher) Fusarium fujikuroi Fusarium graminearum Fusarium oxysporum Fusarium pseudograminearum Fusarium solani Fusarium verticillioides Gadus morhua (Atlantic cod) Gaeumannomyces graminis Gallus gallus (chickens) Gasterosteus aculeatus (three-spined stickleback) Gorilla gorilla (western gorilla) Heliconius melpomene (postman butterfly) Helobdella robusta Homo sapiens (human) Ictidomys tridecemlineatus (thirteen-lined ground squirrel) Ixodes scapularis (shoulder tick) Komagataella pastoris Latimeria chalumnae (coelacanth) Lepeophtheirus salmonis (salmon louse) Lepisosteus oculatus (spotted gar) Leptosphaeria maculans (blackleg of rapeseed fungus) Lingula anatina Loa loa (eye worm) Lottia gigantea (owl limpet) Loxodonta africana (African savannah elephant) Lucilia cuprina (greenbottle fly) Macaca mulatta (rhesus monkeys) Macropus eugenii (tammar wallaby) Magnaporthe oryzae (rice blast fungus) Magnaporthe poae Megaselia scalaris Melampsora laricipopulina Meleagris gallopavo (wild turkey) Melitaea cinxia (Glanville fritillary) Microbotryum violaceum Microcebus murinus (grey mouse lemur) Mnemiopsis leidyi (warty comb jelly) Monodelphis domestica (gray short-tailed opossum) Mus musculus (mouse) Mustela putorius furo (ferret) Myotis lucifugus (little brown bat) Nasonia vitripennis (jewel wasp) Nematostella vectensis (starlet sea anemone) Neosartorya fischeri Neurospora crassa Nomascus leucogenys (northern white-cheeked gibbon) Ochotona princeps (southern American pika) Octopus bimaculoides Onchocerca volvulus Oreochromis niloticus (Nile tilapia) Ornithorhynchus anatinus (platypus) Oryctolagus cuniculus (rabbits) Oryzias latipes (medaka) Otolemur garnettii (small-eared galago) Ovis aries (wild sheep) Pan troglodytes (chimpanzee) Papio anubis (olive baboon) Pediculus humanus (human louse) Pelodiscus sinensis (Chinese softshell turtle) Petromyzon marinus (sea lamprey) Phaeosphaeria nodorum Poecilia formosa (Amazon molly) Pongo abelii (orangutan) Pristionchus pacificus Procavia capensis (rock hyrax) Pteropus vampyrus (large flying fox) Puccinia graminis Puccinia triticina (wheat leaf rust) Pyrenophora teres (barley net-spot blotch disease agent) Pyrenophora triticirepentis Rattus norvegicus (rats) Rhodnius prolixus Saccharomyces cerevisiae (yeast) Saccharomyces cerevisiae (yeast) Sarcophilus harrisii (Tasmanian devil) Sarcoptes scabiei Schistosoma mansoni Schizosaccharomyces cryophilus Schizosaccharomyces japonicus Schizosaccharomyces octosporus Schizosaccharomyces pombe (fission yeast) Sclerotinia sclerotiorum Solenopsis invicta (red imported fire ant) Sorex araneus (European shrew) Sporisorium reilianum Stegodyphus mimosarum Strigamia maritima Strongylocentrotus purpuratus (purple urchin) Strongyloides ratti Sus scrofa (wild boar) Taeniopygia guttata (zebra finch) Takifugu rubripes (torafugu) Tarsius syrichta Tetranychus urticae (twospotted mite) Tetraodon nigroviridis (spotted green pufferfish) Thelohanellus kitauei Tribolium castaneum (rust-red flour beetle) Trichinella spiralis Trichoderma reesei Trichoderma virens Trichoplax adhaerens Tuber melanosporum (black truffle) Tupaia belangeri (northern tree shrew) Tursiops truncatus (bottlenosed dolphin) Ustilago maydis Verticillium dahliae Vicugna pacos (alpaca) Xenopus tropicalis (western clawed frog) Xiphophorus maculatus (southern platyfish) Yarrowia lipolytica Zootermopsis nevadensis Zymoseptoria tritici

PHENOTYPES TO BE ANALYZED:

Source of phenome: Human phenotype (HP) Mouse phenotype (MP) Drosophila phenotype (FlyBase) Zebrafish anatomy and development (ZFA) C. elegans phenotype (WBPhenotype) Baker's yeast phenotype (SGD)

1.Pre-defined phenotypic categories from

level to level ( all levels)

2.Customized phenotype

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GENE SETS TO BE ANALYZED:

Data set 1

Title of Gene Set 1:
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Against rest of genes in the genome
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Title of Gene Set 2:
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ALTERNATIVE HYPOTHESIS:

Fisher's Exact Test: Differentially Enriched Set 1 Enriched Set 1 Depleted

EXAMPLE DATASETS:

Dataset 1.1 Dataset 1.2 / Dataset 2.1 Dataset 2.2 / Dataset 3.1 / Dataset 3.2 / Dataset 4 / Dataset 5 / Dataset 6

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